Agents & InferencearXiv

MCP vs CLI for AI Agents: A Comparative Analysis of Tool Integration Strategies for Autonomous Systems

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Summary A

MCP reduces security risks vs CLI in multi-tenant environments by enforcing credential isolation, structured audit, and fine-grained access control—critical for compliance with frameworks like NSA guidance. This lets teams safely scale agent deployments with shared tools and audit trails, but requires adopting structured protocols over raw shell commands—a tradeoff justified for production systems handling sensitive data or multiple users. [Summary marks practical adoption impact: security/compliance gains outweigh CLI's local efficiency advantage, especially in regulated contexts—directly actionable for engineers deploying agents at scale.]